Research

Research Interests

genomics, bioinformatics, machine learning,  molecular biology, genome annotation, protein folding

Google Scholar & Selected First Author Publications

Protein or not protein? - NAR Genomics and Bioinformatics 2025, Editor's Choice

We use protein folding prediction to improve annotation of the human genome!  - eLife 2022

A temporal convolutional network improves bacterial gene finding - PLOS Computational Biology 2021

Open Source Software & Data

PSAURON - a tool for assessing proteins across a broad range of species - GitHub

CHESS Human Protein Structure Database - 3D protein structure predictions for the whole human genome - isoform.io

Balrog - use a neural network to find bacterial genes - Python version,  C++ version